PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02035.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 201aa    MW: 23160 Da    PI: 7.2159
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02035.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.5e-081451782154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp++e++++L +++gL+ +q+ +WF N+R +
  KHN02035.1 145 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 178
                 469*****************************87 PP

2ELK30.11.1e-1099120122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+++++++++E++
  KHN02035.1  99 ELKHELKQGYKEKIVDIREEIL 120
                 9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037911.2E-13141IPR005541KNOX2
SMARTSM012561.5E-14142IPR005541KNOX2
PfamPF037893.8E-799120IPR005539ELK domain
PROSITE profilePS512139.96999119IPR005539ELK domain
SMARTSM011886.1E-499120IPR005539ELK domain
PROSITE profilePS5007111.726119182IPR001356Homeobox domain
SuperFamilySSF466892.65E-16121185IPR009057Homeodomain-like
SMARTSM003894.7E-11121186IPR001356Homeobox domain
CDDcd000861.95E-11122183No hitNo description
Gene3DG3DSA:1.10.10.601.2E-25126183IPR009057Homeodomain-like
PfamPF059204.0E-18139178IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSHYVLLLCS FKEQLQQHVR VHAMEAVMAC WDIEQSLQSL TGVSPGEGTG ATMSDDEDDQ  60
VDSDANLFDS SFDGADGMGF GPLVPTESER SLMERVRQEL KHELKQGYKE KIVDIREEIL  120
RKRRAGKLPG DTTSVLKAWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW  180
HSNPSTSTVL KSKRKRYSHQ N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-13122186872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175195RKRNWHSNPSTSTVLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311740.0KT031174.1 Glycine max clone HN_CCL_151 homeodomain/HOMEOBOX transcription factor (Glyma17g32980.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014622540.11e-148PREDICTED: homeobox protein knotted-1-like 3 isoform X2
SwissprotP480001e-132KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0B2NY921e-151A0A0B2NY92_GLYSO; Homeobox protein knotted-1-like 3
TrEMBLI1M9G11e-148I1M9G1_SOYBN; Uncharacterized protein
STRINGGLYMA14G13750.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-126KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]